A Glimpse on the Evolution of RNA Viruses: Implications and Lessons from SARS-CoV-2Review Published on 2022-12-202023-07-11 Journal: Viruses [Category] COVID19(2023년), [키워드] coronavirus Evolution Mutation Quasispecies recombination. RNA virus SARS-CoV-2 [DOI] 10.3390/v15010001 PMC 바로가기 [Article Type] Review
Multiple Mutations Associated with Emergent Variants Can Be Detected as Low-Frequency Mutations in Early SARS-CoV-2 Pandemic Clinical SamplesArticle Published on 2022-12-132023-07-11 Journal: Viruses [Category] COVID19(2023년), [키워드] emergence Evolution iSNV LoFreq Mutation Quasispecies sequence Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) Variant. [DOI] 10.3390/v14122775 PMC 바로가기
Quasispecies Analysis of SARS-CoV-2 of 15 Different Lineages during the First Year of the Pandemic Prompts Scratching under the Surface of Consensus Genome SequencesArticle Published on 2022-12-102023-07-11 Journal: International Journal of Molecular Sciences [Category] COVID19(2023년), [키워드] Marseille Next-generation sequencing Quasispecies SARS-CoV-2 Variant. [DOI] 10.3390/ijms232415658 PMC 바로가기
Compartmentalisation of Hepatitis B virus X gene evolution in hepatocellular carcinoma microenvironment and the genotype-phenotype correlation of tumorigenicity in HBV-related patients with hepatocellular carcinomaArticle Published on 2022-12-012023-06-13 Journal: Emerging Microbes & Infections [Category] B형 간염, Fulltext, [키워드] Hepatitis B virus Hepatocellular carcinoma Mutation Quasispecies tumorigenicity. [DOI] 10.1080/22221751.2022.2125344 PMC 바로가기
Quasispecies Fitness Partition to Characterize the Molecular Status of a Viral Population. Negative Effect of Early Ribavirin Discontinuation in a Chronically Infected HEV PatientArticle Published on 2022-11-242023-06-11 Journal: International Journal of Molecular Sciences [Category] E형 간염, Fulltext, SARS, [키워드] Deep-sequencing fitness mutagens Quasispecies rare haplotypes variability. [DOI] 10.3390/ijms232314654 PMC 바로가기
As the virus evolves, so too must we: a drug developer’s perspective : We need a new paradigm in searching for next-generation countermeasuresArticle Published on 2022-10-102022-11-15 Journal: Virology Journal [Category] COVID19(2023년), SARS, 변종, 치료제, [키워드] addition antibody Antiviral approach cellular immunity COVID19 develop drug drug resistance drugs Effect effective Evolution of SARS-CoV-2 Genetic greater HAD HDTx host-directed antiviral Host-directed therapeutics humoral immune immune evasion in sight infections offer omicron Pandemic countermeasures Perspective plasticity population immunity Quasispecies recombinant reduce risk SARS-CoV-2 SARS-CoV-2 variant SARS-CoV-2 virus SARS-CoV-2. selective severity strain Treatment Vaccine variant variants virus [DOI] 10.1186/s12985-022-01887-y PMC 바로가기
Comparative analysis of SARS-CoV-2 quasispecies in the upper and lower respiratory tract shows an ongoing evolution in the spike cleavage site상부 및 하부 호흡기에서 SARS-CoV-2 유사종의 비교 분석은 스파이크 절단 부위에서 진행 중인 진화를 보여줍니다Article Published on 2022-07-022022-09-11 Journal: Virus research [Category] COVID19(2023년), SARS, 변종, 치료기술, [키워드] ACE2 acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 Cell cleavage site Comparative analysis coronavirus deep deep sequencing Deleterious mutations evidenced Evolution explained genomic humans incidence INDEL indels intensive care intensive care unit locus Lower respiratory tract LRT Macrophage Minority variants Mutation Next-generation sequencing Non-synonymous mutation Patient phagocytosis Quasispecies quasispecy Result S gene SARS-CoV-2 selective severe acute respiratory syndrome Coronavirus specimens spike Spike protein spillover. the Spike upper and lower respiratory tract upper respiratory tract URT variant variants viral quasispecy virus was performed [DOI] 10.1016/j.virusres.2022.198786 PMC 바로가기 [Article Type] Article
Multiorgan and Vascular Tropism of SARS-CoV-2SARS-CoV-2의 다기관 및 혈관 친화성Case Reports Published on 2022-03-032022-09-11 Journal: Viruses [Category] SARS, 치료기술, 치료제, [키워드] active viral replication adrenal gland Affect biopsies contribute COVID-19 COVID-19 patient deep sequencing distribution favor Genetic heterogeneous highlight histological Infection Inferior vena cava Intra-host variability investigated lower respiratory system multiple tissues Mutation organ organs other tissue other tissues pancreas Post-mortem Quasispecies respiratory tract RNA transcript SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 mutation SARS-CoV-2 mutations Sequencing specimen Spike protein stomach the SARS-CoV-2 the spike protein tissue tissues tropism ultra-deep sequencing Variability vena Viral quasispecies viral quasispecies. Virological was performed [DOI] 10.3390/v14030515 PMC 바로가기 [Article Type] Case Reports
SARS-CoV-2 variants with reduced infectivity and varied sensitivity to the BNT162b2 vaccine are developed during the course of infection감염성이 감소하고 BNT162B2 백신에 대한 감도가 다양한 SARS-COV-2 변이체가 감염 과정에서 개발됩니다.Clinical Trial Published on 2022-01-122022-08-13 Journal: PLoS Pathogens [Category] Biochemistry, 변종, 임상, 치료기술, 치료법, [키워드] addition Affect Analysis analyzed Anti-spike Antibody neutralization antibody neutralization activity Author BNT162b2 BNT162b2 vaccine circulating convalescent plasma Course COVID-19 vaccine COVID-19 vaccines demonstrated elicit employment Evolution Frequency highlight Host human host human population impair in-depth analysis increase in individual infected individual infected individuals Infection infectivity capacity intra-host SARS-CoV-2 variant intra-host SARS-CoV-2 variants Intra-host variant intra-host variants L1197I mutation landscape less low frequencies mRNA mRNA-based mutated mutated variant mutated variants N gene N genes natural infection neutralization Neutralizing antibodies nose-throat swab nose-throat swabs pandemic plasma plasma neutralization activity platform Point mutation potential circulating variants Protective Quasispecies quasispecy raised reduced respiratory Respiratory system S gene S2 subunit SARS-CoV-2 SARS-CoV-2 evolution SARS-CoV-2 intra-host variability SARS-CoV-2 intra-host variant SARS-CoV-2 intra-host variants SARS-CoV-2 mutagenesis SARS-CoV-2 variant SARS-CoV-2 variants sensitivity Sequencing Sequencing database Sequencing databases single-genome sequencing Spike protein Spike proteins spike variant Spread swab sample swab samples the SARS-CoV-2 the spike protein vaccinated individuals vaccination rate variant variants variants of concern [DOI] 10.1371/journal.ppat.1010242 PMC 바로가기 [Article Type] Clinical Trial
Influence of treatment with neutralizing monoclonal antibodies on the SARS-CoV-2 nasopharyngeal load and quasispeciesArticle Published on 2022-01-012023-07-02 Journal: Clinical microbiology and infection : the official [Category] SARS, [키워드] Coronavirus disease 2019 mutations neutralizing monoclonal antibodies Quasispecies Receptor-binding domain severe acute respiratory syndrome coronavirus 2 Single-molecular real-time sequencing spike protein. [DOI] 10.1016/j.cmi.2021.09.008 PMC 바로가기